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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
584
ChIP-seq
177
DNase-seq
150
ATAC-seq
16
WGBS
1
total RNA-seq
Assay category
584
DNA binding
327
DNA accessibility
16
DNA methylation
1
Transcription
Target of assay
488
histone modification
487
histone
250
narrow histone mark
237
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
153
October, 2019
92
May, 2019
69
August, 2017
64
April, 2019
64
August, 2021
57
November, 2017
45
October, 2018
40
May, 2024
36
December, 2017
35
February, 2023
22
November, 2018
20
November, 2019
19
May, 2020
14
July, 2019
October, 2017
12
May, 2023
8
February, 2021
6
January, 2019
3
December, 2018
2
March, 2019
2
March, 2020
2
September, 2017
Available data
1698
bigWig
1690
bam
tsv
871
bed narrowPeak
549
bigBed narrowPeak
266
fastq
204
bed bed3+
187
bed broadPeak
176
bigBed broadPeak
110
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
922
Homo sapiens
Biosample type
928
tissue
360
cell line
284
primary cell
138
in vitro differentiated cells
3
stem cell
Organ
187
brain
178
heart
163
kidney
110
pancreas
101
blood vessel
101
vasculature
92
limb
86
liver
62
artery
38
musculature of body
27
nerve
25
adipose tissue
25
connective tissue
18
ureter
15
spleen
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
926
AMP
2
T1D
Genome assembly (visualization)
928
GRCh38
824
hg19
Lab
811
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
month_released!
October, 2017
BIOSAMPLE
ASSAY
928 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
tissue
kidney
20
13
75
liver
75
2
islet of Langerhans
25
1
21
coronary artery
3
2
36
left cardiac atrium
40
1
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