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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
339
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
1
total RNA-seq
Assay category
339
DNA binding
335
DNA accessibility
16
DNA methylation
1
Transcription
Target of assay
494
histone modification
493
histone
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
64
August, 2021
60
May, 2019
51
August, 2017
45
October, 2019
42
April, 2019
38
November, 2017
35
February, 2023
34
December, 2017
34
October, 2018
25
May, 2024
22
November, 2018
20
November, 2019
14
July, 2019
13
October, 2017
12
May, 2023
8
February, 2021
4
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1469
bam
1463
bigWig
tsv
636
bed narrowPeak
448
bigBed narrowPeak
252
fastq
198
bed bed3+
185
bed broadPeak
176
bigBed broadPeak
64
xls
40
tagAlign
16
bed bedMethyl
16
bigBed bedMethyl
Organism
687
Homo sapiens
Biosample type
691
tissue
344
cell line
182
primary cell
98
in vitro differentiated cells
2
stem cell
Organ
153
kidney
141
heart
90
brain
89
pancreas
83
blood vessel
83
vasculature
79
limb
58
liver
56
artery
37
musculature of body
25
adipose tissue
25
connective tissue
19
nerve
18
ureter
14
spleen
8
bone element
8
skeleton
3
eye
Project
691
AMP
Genome assembly (visualization)
691
GRCh38
598
hg19
Lab
588
AMP-T2D consortium
75
Katalin Susztak, Upenn
25
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
691 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
tissue
kidney
10
13
75
liver
49
2
coronary artery
1
2
36
islet of Langerhans
15
1
22
body of pancreas
20
4
4
2
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