Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1391
ChIP-seq
287
ATAC-seq
180
DNase-seq
85
RNA microarray
28
WGBS
28
snATAC-seq
20
Hi-C
11
RRBS
10
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
1391
DNA binding
499
DNA accessibility
Transcription
39
DNA methylation
20
3D chromatin structure
1
DNA sequencing
Target of assay
666
histone modification
665
histone
455
transcription factor
343
narrow histone mark
322
broad histone mark
270
control
93
RNA binding protein
89
recombinant protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
397
November, 2017
246
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
110
February, 2021
100
August, 2021
87
February, 2023
87
November, 2018
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
36
November, 2019
35
December, 2018
30
July, 2019
25
January, 2019
23
October, 2017
18
May, 2021
12
March, 2020
11
May, 2023
10
April, 2020
10
November, 2020
8
January, 2021
6
September, 2017
5
March, 2019
3
January, 2018
1
August, 2022
1
October, 2022
Available data
1462
bam
1388
bed narrowPeak
1273
bigWig
916
bigBed narrowPeak
696
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
208
bed bed3+
86
txt
64
xls
tsv
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
2054
Homo sapiens
Biosample type
1524
tissue
634
primary cell
541
cell line
254
in vitro differentiated cells
4
stem cell
Organ
572
liver
270
pancreas
242
brain
215
heart
192
kidney
133
blood vessel
133
vasculature
115
limb
96
bone element
89
connective tissue
88
adipose tissue
83
artery
74
musculature of body
61
blood
61
bodily fluid
56
epithelium
38
nerve
37
eye
24
spleen
18
ureter
12
skeleton
10
lung
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
2024
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1301
GRCh38
1261
hg19
Lab
1826
AMP-T2D consortium
82
Katalin Susztak, Upenn
45
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
141
inconsistent ontology term
28
inconsistent control
2
audit script error
1
inconsistent replicate
Audit category:
39
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
files.file_type!
tsv
assay_slims!
Transcription
BIOSAMPLE
ASSAY
2065 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
Hi-C
RRBS
MeRIP-seq
pCHi-C
STARR-seq
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
whole genome sequencing assay
tissue
liver
145
20
2
3
1
1
islet of Langerhans
71
67
1
7
3
1
4
4
1
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
+ See 145 more…
cell line
HepG2
378
1
1
2
1
2
1
GM12878
60
1
EndoC_BH1
15
18
1
6
3
2
2
1
Panc1
13
1
1
smooth muscle cell of the coronary artery
6
8
+ See 8 more…
See all biosamples
Download