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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
604
ChIP-seq
257
ATAC-seq
178
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
604
DNA binding
467
DNA accessibility
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
October, 2019
163
June, 2019
130
August, 2021
122
August, 2017
93
February, 2021
91
February, 2023
66
May, 2022
59
May, 2019
55
October, 2018
50
May, 2020
47
September, 2023
45
December, 2017
43
April, 2019
40
November, 2017
30
July, 2019
26
November, 2018
21
November, 2019
20
May, 2024
19
April, 2020
15
May, 2023
13
October, 2017
12
March, 2020
8
January, 2021
7
December, 2018
6
September, 2017
4
July, 2018
4
November, 2020
3
January, 2019
3
March, 2019
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1684
bam
1519
bigWig
tsv
731
bed narrowPeak
357
bigBed narrowPeak
331
fastq
199
bed bed3+
192
bed broadPeak
176
bigBed broadPeak
162
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1391
Homo sapiens
Biosample type
1396
tissue
696
primary cell
524
cell line
207
in vitro differentiated cells
5
stem cell
Organ
277
kidney
187
pancreas
182
liver
172
brain
145
heart
100
bone element
83
blood vessel
83
vasculature
81
limb
70
connective tissue
69
adipose tissue
59
musculature of body
55
artery
51
eye
22
nerve
20
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1299
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
699
GRCh38
638
hg19
Lab
1067
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
tsv
lab.title!
Mark McCarthy, Oxford
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1396 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
17
75
13
49
59
6
1
1
1
islet of Langerhans
57
65
1
31
7
3
1
4
1
4
liver
123
20
2
20
1
3
1
1
bone element
84
coronary artery
5
36
2
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