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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
48
ChIP-seq
9
total RNA-seq
2
snATAC-seq
1
single cell RNA-seq
Assay category
81
DNA accessibility
48
DNA binding
10
Transcription
Target of assay
31
transcription factor
12
control
5
histone
5
histone modification
3
broad histone mark
2
RNA binding protein
2
chromatin remodeller
2
narrow histone mark
Date released
234
October, 2019
195
August, 2017
163
June, 2019
130
August, 2021
115
May, 2019
93
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
15
May, 2023
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
99
bed narrowPeak
48
bam
48
fastq
36
bigBed narrowPeak
36
bigWig
5
bed bed3
tsv
4
txt
Organism
139
Homo sapiens
Biosample type
139
tissue
76
primary cell
59
in vitro differentiated cells
6
cell line
3
stem cell
Organ
48
liver
36
heart
35
artery
35
blood vessel
35
vasculature
27
eye
18
pancreas
12
epithelium
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
121
AMP
18
T1D
Genome assembly (visualization)
71
GRCh38
69
hg19
Lab
121
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
files.file_type!
tsv
BIOSAMPLE
ASSAY
139 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
tissue
liver
38
coronary artery
35
islet of Langerhans
11
5
2
retina
15
pigmented layer of retina
12
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