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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
872
ChIP-seq
ATAC-seq
176
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
872
DNA binding
208
DNA accessibility
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
604
histone modification
603
histone
316
narrow histone mark
287
broad histone mark
176
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
193
August, 2017
181
October, 2019
163
June, 2019
115
May, 2019
85
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
66
August, 2021
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
28
May, 2022
26
November, 2018
24
July, 2019
19
April, 2020
15
October, 2017
12
February, 2023
11
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
4
July, 2018
4
May, 2023
4
November, 2020
2
May, 2021
1
August, 2022
1
December, 2019
1
March, 2019
1
November, 2019
Available data
1802
bam
1699
bigWig
tsv
750
bed narrowPeak
532
bigBed narrowPeak
348
fastq
238
tagAlign
209
bed broadPeak
203
bed bed3+
174
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1396
Homo sapiens
Biosample type
1405
tissue
630
primary cell
515
cell line
221
in vitro differentiated cells
6
stem cell
Organ
238
brain
212
kidney
186
liver
169
pancreas
163
heart
107
limb
88
bone element
84
connective tissue
83
adipose tissue
81
blood vessel
81
vasculature
74
musculature of body
nerve
32
artery
23
eye
23
spleen
19
lung
18
ureter
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
Project
1319
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
758
GRCh38
690
hg19
Lab
1183
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
organ_slims!
nerve
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
1405 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
liver
145
2
20
1
3
1
1
kidney
27
13
49
59
6
1
1
1
islet of Langerhans
71
1
31
7
3
1
4
1
4
bone element
84
heart left ventricle
35
3
4
1
1
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