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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
872
ChIP-seq
258
ATAC-seq
176
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
872
DNA binding
466
DNA accessibility
177
Transcription
38
DNA methylation
Target of assay
604
histone modification
603
histone
316
narrow histone mark
287
broad histone mark
176
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
195
August, 2017
195
October, 2019
163
June, 2019
128
August, 2021
115
May, 2019
93
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
26
July, 2019
26
November, 2018
23
October, 2017
20
November, 2019
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2020
4
July, 2018
4
March, 2019
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1865
bam
1741
bigWig
tsv
957
bed narrowPeak
535
bigBed narrowPeak
377
fastq
238
tagAlign
211
bed broadPeak
203
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1638
Homo sapiens
Biosample type
1647
tissue
808
primary cell
539
cell line
259
in vitro differentiated cells
6
stem cell
Organ
286
kidney
242
brain
226
pancreas
206
liver
199
heart
118
blood vessel
118
vasculature
111
limb
100
bone element
90
connective tissue
89
adipose tissue
69
artery
69
musculature of body
51
eye
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1550
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
915
GRCh38
799
hg19
Lab
1299
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
organ_slims!
nerve
assay_title!
Hi-C
BIOSAMPLE
ASSAY
1647 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
liver
145
20
2
20
1
3
1
islet of Langerhans
71
67
1
31
7
1
4
1
4
bone element
84
body of pancreas
35
4
4
2
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