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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
973
total RNA-seq
838
ChIP-seq
259
ATAC-seq
160
single cell RNA-seq
146
DNase-seq
27
snATAC-seq
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1148
Transcription
838
DNA binding
436
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
568
histone modification
567
histone
300
narrow histone mark
267
broad histone mark
183
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
258
August, 2017
242
October, 2019
193
May, 2020
172
August, 2021
131
June, 2019
120
July, 2018
108
May, 2019
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
58
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
November, 2019
35
March, 2020
26
November, 2018
23
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1863
bam
1675
bigWig
1069
tsv
893
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2490
Homo sapiens
Biosample type
2499
tissue
1074
primary cell
661
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
499
pancreas
488
adipose tissue
361
liver
273
heart
265
brain
237
kidney
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2402
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1777
GRCh38
1694
hg19
Lab
2250
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
txt
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
2499 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
292
71
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
27
75
51
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
1
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