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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
196
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
DNA binding
406
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
165
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
66
May, 2022
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1185
bam
1157
bigWig
1076
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1804
Homo sapiens
Biosample type
1806
tissue
809
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
388
pancreas
208
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1711
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1226
hg19
1205
GRCh38
Lab
1558
AMP-T2D consortium
78
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
files.file_type!
xls
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
1806 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
298
68
1
7
4
3
1
1
4
liver
167
20
2
1
3
1
1
1
1
kidney
49
11
13
64
6
1
1
1
bone element
84
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