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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
35
ChIP-seq
2
ATAC-seq
Assay category
35
DNA binding
2
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
26
August, 2017
6
November, 2017
4
October, 2017
1
March, 2019
Available data
1730
bam
1555
bigWig
1076
tsv
767
bed narrowPeak
384
bigBed narrowPeak
367
fastq
238
tagAlign
157
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
31
Homo sapiens
Biosample type
58
cell line
37
tissue
21
primary cell
Organ
14
pancreas
13
musculature of body
9
brain
1
adipose tissue
1
connective tissue
Project
37
AMP
Genome assembly (visualization)
36
hg19
15
GRCh38
Lab
35
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
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