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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
176
DNase-seq
3
ATAC-seq
3
FAIRE-seq
Assay category
360
DNA binding
182
DNA accessibility
Target of assay
295
histone
295
histone modification
192
broad histone mark
103
narrow histone mark
65
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
93
May, 2019
64
April, 2019
58
November, 2017
47
October, 2019
45
October, 2018
August, 2017
36
December, 2017
17
November, 2018
7
October, 2017
6
January, 2019
3
December, 2018
2
July, 2019
1
March, 2019
Available data
1737
bam
1554
bigWig
987
tsv
878
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
542
Homo sapiens
Biosample type
542
tissue
361
cell line
92
primary cell
16
in vitro differentiated cells
Organ
117
brain
88
heart
87
kidney
84
limb
62
blood vessel
62
vasculature
50
pancreas
43
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
8
adipose tissue
8
connective tissue
3
eye
Project
542
AMP
Genome assembly (visualization)
535
GRCh38
473
hg19
Lab
540
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
542 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
33
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
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