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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
10
ChIP-seq
2
ATAC-seq
Assay category
178
DNA accessibility
10
DNA binding
Target of assay
10
histone
10
histone modification
6
narrow histone mark
4
broad histone mark
Date released
163
June, 2019
August, 2017
9
November, 2018
6
November, 2017
5
October, 2019
4
October, 2017
1
March, 2019
Available data
1737
bam
1594
bigWig
987
tsv
918
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
188
Homo sapiens
Biosample type
188
tissue
59
cell line
35
primary cell
Organ
68
kidney
37
brain
36
limb
32
musculature of body
27
heart
18
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
3
eye
3
liver
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
188
AMP
Genome assembly (visualization)
186
GRCh38
171
hg19
Lab
186
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
month_released!
August, 2017
BIOSAMPLE
ASSAY
188 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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