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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
9
ChIP-seq
2
ATAC-seq
1
snATAC-seq
Assay category
179
DNA accessibility
72
Transcription
9
DNA binding
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
Date released
163
June, 2019
89
February, 2021
57
August, 2021
August, 2017
9
November, 2018
7
May, 2022
6
November, 2017
4
February, 2023
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1737
bam
1554
bigWig
987
tsv
878
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
344
Homo sapiens
Biosample type
344
tissue
60
cell line
35
primary cell
3
in vitro differentiated cells
Organ
130
kidney
88
bone element
36
brain
36
limb
33
musculature of body
27
heart
18
ureter
14
pancreas
5
blood vessel
5
vasculature
4
artery
4
skeleton
3
eye
3
liver
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
344
AMP
Genome assembly (visualization)
185
GRCh38
171
hg19
Lab
279
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
85
inconsistent ontology term
6
audit script error
Audit category:
2
missing controlled_by
month_released!
August, 2017
BIOSAMPLE
ASSAY
344 results
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DNase-seq
RNA microarray
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
tissue
bone element
84
kidney
13
49
13
heart
18
brain
14
3
muscle of arm
17
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