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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
DNase-seq
22
ChIP-seq
2
ATAC-seq
Assay category
146
DNA accessibility
22
DNA binding
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
Date released
131
June, 2019
13
August, 2017
9
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1863
bam
1675
bigWig
1069
tsv
893
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
162
Homo sapiens
Biosample type
168
tissue
59
cell line
48
primary cell
1
in vitro differentiated cells
Organ
68
kidney
musculature of body
36
brain
36
limb
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
adipose tissue
3
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
168
AMP
Genome assembly (visualization)
159
GRCh38
151
hg19
Lab
166
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
168 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
kidney
13
renal cortex interstitium
11
renal pelvis
10
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