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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
DNase-seq
14
ChIP-seq
1
ATAC-seq
Assay category
175
DNA accessibility
14
DNA binding
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
Date released
162
June, 2019
8
November, 2018
6
August, 2017
5
November, 2017
4
October, 2017
4
October, 2019
Available data
1282
bam
1252
bigWig
832
bed narrowPeak
546
bigBed narrowPeak
521
tsv
257
fastq
198
bed bed3+
189
bed broadPeak
174
bigBed broadPeak
116
tagAlign
64
xls
14
bed bedMethyl
14
bigBed bedMethyl
1
tagAlign bed3+
Organism
183
Homo sapiens
Biosample type
189
tissue
45
cell line
45
primary cell
1
in vitro differentiated cells
Organ
68
kidney
36
limb
35
brain
32
musculature of body
27
heart
18
ureter
13
pancreas
5
blood vessel
5
vasculature
4
artery
3
eye
3
liver
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
189
AMP
Genome assembly (visualization)
193
hg19
189
GRCh38
Lab
188
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
189 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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