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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
DNase-seq
34
ChIP-seq
2
ATAC-seq
Assay category
140
DNA accessibility
34
DNA binding
Target of assay
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
Date released
130
June, 2019
25
August, 2017
8
November, 2018
6
November, 2017
4
October, 2017
1
March, 2019
Available data
1353
bam
1258
bigWig
879
bed narrowPeak
670
tsv
467
bigBed narrowPeak
334
fastq
230
tagAlign
174
bed broadPeak
163
bed bed3+
157
txt
138
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
168
Homo sapiens
Biosample type
174
tissue
59
cell line
49
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
brain
limb
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
adipose tissue
3
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
174
AMP
Genome assembly (visualization)
157
hg19
153
GRCh38
Lab
172
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
adipose tissue
limb
BIOSAMPLE
ASSAY
174 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
kidney
13
skeletal muscle tissue
13
renal cortex interstitium
11
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