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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
DNase-seq
80
ChIP-seq
2
ATAC-seq
Assay category
147
DNA accessibility
80
DNA binding
Target of assay
44
transcription factor
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
131
June, 2019
64
November, 2017
13
August, 2017
9
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
Available data
2445
bam
2197
bigWig
1297
bed narrowPeak
1188
tsv
878
bigBed narrowPeak
802
fastq
243
tagAlign
227
bed broadPeak
203
bigBed broadPeak
175
bed bed3+
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
221
Homo sapiens
Biosample type
168
tissue
59
cell line
48
primary cell
1
in vitro differentiated cells
Organ
68
kidney
61
liver
musculature of body
36
brain
36
limb
27
heart
21
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
adipose tissue
3
connective tissue
3
eye
2
nerve
1
spleen
Project
227
AMP
Genome assembly (visualization)
210
hg19
204
GRCh38
Lab
225
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
227 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 40 more…
cell line
HepG2
58
Panc1
1
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