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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
730
ChIP-seq
179
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
730
DNA binding
186
DNA accessibility
Target of assay
393
transcription factor
332
histone
332
histone modification
214
broad histone mark
118
narrow histone mark
81
RNA binding protein
81
recombinant protein
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
163
June, 2019
93
May, 2019
73
November, 2018
64
April, 2019
55
October, 2019
45
October, 2018
36
December, 2017
30
December, 2018
22
August, 2017
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2489
bam
2254
bigWig
1348
bed narrowPeak
1195
tsv
916
bigBed narrowPeak
804
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
208
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
910
Homo sapiens
Biosample type
561
tissue
355
cell line
109
primary cell
17
in vitro differentiated cells
Organ
342
liver
116
brain
88
heart
88
kidney
84
limb
69
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
1
epithelium
Project
916
AMP
Genome assembly (visualization)
878
GRCh38
844
hg19
Lab
916
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
916 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 53 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
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