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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
170
DNase-seq
3
ATAC-seq
2
FAIRE-seq
Assay category
324
DNA binding
175
DNA accessibility
Target of assay
269
histone
269
histone modification
177
broad histone mark
92
narrow histone mark
55
transcription factor
14
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
159
June, 2019
92
May, 2019
64
April, 2019
57
November, 2017
47
October, 2019
36
December, 2017
14
November, 2018
8
August, 2017
6
January, 2019
6
October, 2017
5
October, 2018
3
December, 2018
2
July, 2019
Available data
1478
bam
1359
bigWig
821
bed narrowPeak
801
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
499
Homo sapiens
Biosample type
499
tissue
348
cell line
87
primary cell
17
in vitro differentiated cells
Organ
116
brain
88
heart
87
kidney
84
limb
62
blood vessel
pancreas
62
vasculature
49
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
499
AMP
Genome assembly (visualization)
495
GRCh38
433
hg19
Lab
499
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
499 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
tibial nerve
24
2
heart
7
18
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