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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
575
ChIP-seq
177
DNase-seq
43
ATAC-seq
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
575
DNA binding
224
DNA accessibility
Target of assay
487
histone modification
486
histone
253
narrow histone mark
233
broad histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
176
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
57
November, 2017
55
July, 2019
45
October, 2018
38
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
17
November, 2018
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1890
bam
1716
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
367
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1710
Homo sapiens
Biosample type
1716
tissue
613
primary cell
521
cell line
259
in vitro differentiated cells
3
stem cell
Organ
479
connective tissue
421
adipose tissue
369
pancreas
265
liver
202
brain
111
heart
91
kidney
90
limb
69
blood vessel
69
vasculature
58
bone element
56
musculature of body
31
nerve
27
artery
18
ureter
14
spleen
3
eye
1
pituitary gland
Project
1714
AMP
2
T1D
Genome assembly (visualization)
1656
GRCh38
1647
hg19
Lab
1695
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
BIOSAMPLE
ASSAY
1716 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
29
1
3
1
liver
147
82
2
20
1
bone tissue
58
body of pancreas
2
26
4
4
2
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