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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
471
ChIP-seq
177
DNase-seq
43
ATAC-seq
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
471
DNA binding
224
DNA accessibility
Target of assay
378
histone modification
377
histone
202
broad histone mark
175
narrow histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
163
June, 2019
150
August, 2017
143
May, 2020
120
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
55
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
17
November, 2018
12
November, 2017
11
March, 2020
8
October, 2017
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1890
bam
1756
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
367
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1612
Homo sapiens
Biosample type
1612
tissue
514
primary cell
504
cell line
241
in vitro differentiated cells
3
stem cell
Organ
478
connective tissue
420
adipose tissue
357
pancreas
238
liver
151
heart
120
brain
91
kidney
90
limb
69
blood vessel
69
vasculature
58
bone element
43
musculature of body
31
nerve
27
artery
18
ureter
14
spleen
3
eye
Project
1610
AMP
2
T1D
Genome assembly (visualization)
1581
GRCh38
1542
hg19
Lab
1551
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
WGBS
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
1612 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
23
1
3
1
liver
147
55
2
20
1
bone tissue
58
left cardiac atrium
40
1
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