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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
870
total RNA-seq
615
ChIP-seq
177
DNase-seq
37
ATAC-seq
WGBS
2
FAIRE-seq
Assay category
870
Transcription
615
DNA binding
216
DNA accessibility
Target of assay
522
histone modification
521
histone
268
narrow histone mark
253
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
176
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
57
November, 2017
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
17
November, 2018
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1835
bam
1701
bigWig
1029
tsv
977
bed narrowPeak
559
bigBed narrowPeak
367
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe
1
tagAlign bed3+
Organism
1695
Homo sapiens
Biosample type
1701
tissue
591
primary cell
521
cell line
259
in vitro differentiated cells
3
stem cell
Organ
469
connective tissue
411
adipose tissue
365
pancreas
258
liver
192
brain
140
heart
90
limb
88
kidney
64
blood vessel
64
vasculature
58
bone element
54
musculature of body
31
nerve
26
artery
18
ureter
14
spleen
3
eye
1
pituitary gland
Project
1699
AMP
2
T1D
Genome assembly (visualization)
1643
GRCh38
1593
hg19
Lab
1640
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
month_released!
July, 2019
BIOSAMPLE
ASSAY
1701 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
29
1
3
1
liver
145
82
2
20
bone tissue
58
left cardiac atrium
40
1
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