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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
503
ChIP-seq
157
DNase-seq
39
ATAC-seq
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
503
DNA binding
200
DNA accessibility
Target of assay
416
histone modification
415
histone
231
narrow histone mark
184
broad histone mark
87
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
176
August, 2017
170
May, 2020
145
June, 2019
139
October, 2019
116
July, 2018
90
May, 2019
65
April, 2019
53
July, 2019
45
October, 2018
38
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
17
November, 2018
13
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
2
January, 2018
Available data
1621
bam
1620
bigWig
918
tsv
750
bed narrowPeak
468
bigBed narrowPeak
294
fastq
192
bed broadPeak
185
bed bed3+
156
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1614
Homo sapiens
Biosample type
1620
tissue
594
primary cell
461
cell line
254
in vitro differentiated cells
2
stem cell
Organ
479
connective tissue
421
adipose tissue
367
pancreas
265
liver
139
brain
109
heart
90
kidney
90
limb
69
blood vessel
69
vasculature
58
bone element
56
musculature of body
31
nerve
artery
18
ureter
14
spleen
3
eye
1
pituitary gland
Project
1618
AMP
2
T1D
Genome assembly (visualization)
1685
GRCh38
1620
hg19
Lab
1599
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
artery
BIOSAMPLE
ASSAY
1620 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
29
1
3
1
liver
147
82
2
20
1
bone tissue
58
heart left ventricle
3
29
3
2
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