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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
25
DNase-seq
12
total RNA-seq
4
ATAC-seq
1
small RNA-seq
Assay category
67
DNA binding
29
DNA accessibility
13
Transcription
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
7
transcription factor
5
RNA binding protein
Date released
47
April, 2019
25
June, 2019
15
May, 2019
11
July, 2019
7
October, 2019
2
March, 2020
2
May, 2021
Available data
109
bigWig
108
bam
96
bed narrowPeak
86
bigBed narrowPeak
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
13
tsv
3
bedpe bed3+
3
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
109
Homo sapiens
Biosample type
109
tissue
56
cell line
9
primary cell
1
in vitro differentiated cells
Organ
479
connective tissue
421
adipose tissue
367
pancreas
265
liver
139
brain
109
heart
90
kidney
90
limb
69
blood vessel
69
vasculature
58
bone element
56
musculature of body
31
nerve
27
artery
18
ureter
14
spleen
3
eye
1
pituitary gland
Project
109
AMP
Genome assembly (visualization)
156
GRCh38
109
hg19
Lab
109
AMP-T2D consortium
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
tissue
heart left ventricle
29
3
3
2
heart
12
16
4
1
heart right ventricle
11
1
1
right atrium auricular region
7
2
2
1
coronary artery
3
2
1
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