Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
DNA binding
224
DNA accessibility
16
DNA methylation
Date released
444
February, 2021
163
June, 2019
143
May, 2020
116
July, 2018
95
August, 2017
63
July, 2019
38
May, 2021
20
May, 2022
19
November, 2019
16
November, 2018
15
October, 2019
9
March, 2020
8
October, 2017
6
April, 2018
2
January, 2018
Available data
1185
bam
1157
bigWig
1076
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1157
Homo sapiens
Biosample type
1157
tissue
366
primary cell
144
in vitro differentiated cells
cell line
1
stem cell
Organ
462
connective tissue
404
adipose tissue
291
pancreas
176
liver
71
kidney
58
bone element
50
heart
43
limb
39
brain
38
musculature of body
18
ureter
13
blood vessel
13
vasculature
7
nerve
6
artery
4
spleen
3
eye
Project
1157
AMP
Genome assembly (visualization)
1128
GRCh38
1123
hg19
Lab
1136
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
1157 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
1
3
1
liver
147
2
20
1
bone tissue
58
heart
4
18
1
1
+ See 57 more…
See all biosamples
Download