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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
239
ChIP-seq
40
ATAC-seq
16
WGBS
16
small RNA-seq
Assay category
917
Transcription
239
DNA binding
40
DNA accessibility
16
DNA methylation
Target of assay
211
histone modification
210
histone
160
narrow histone mark
50
broad histone mark
28
transcription factor
7
RNA binding protein
Date released
444
February, 2021
170
May, 2020
156
August, 2017
116
July, 2018
113
October, 2019
61
July, 2019
40
May, 2024
38
May, 2021
20
May, 2022
19
November, 2019
11
March, 2020
8
October, 2017
6
April, 2018
6
November, 2018
2
January, 2018
1
April, 2019
1
November, 2017
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1212
Homo sapiens
Biosample type
1212
tissue
504
primary cell
242
in vitro differentiated cells
cell line
3
stem cell
Organ
471
connective tissue
413
adipose tissue
311
pancreas
216
liver
87
brain
69
heart
58
bone element
19
musculature of body
8
blood vessel
8
vasculature
7
limb
5
nerve
4
kidney
3
spleen
2
artery
1
pituitary gland
Project
1210
AMP
2
T1D
Genome assembly (visualization)
1158
GRCh38
1154
hg19
Lab
1151
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
22
missing controlled_by
biosample_type!
cell line
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
1212 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
29
3
liver
147
44
20
1
bone tissue
58
left cardiac atrium
40
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