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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
804
total RNA-seq
463
ChIP-seq
167
DNase-seq
33
ATAC-seq
16
small RNA-seq
8
WGBS
2
FAIRE-seq
Assay category
820
Transcription
463
DNA binding
202
DNA accessibility
8
DNA methylation
Target of assay
449
histone
449
histone modification
240
narrow histone mark
209
broad histone mark
14
transcription factor
12
RNA binding protein
Date released
444
February, 2021
170
May, 2020
163
June, 2019
160
October, 2019
114
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
40
May, 2024
38
May, 2021
20
August, 2017
20
May, 2022
19
November, 2019
14
October, 2018
11
March, 2020
2
January, 2018
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1493
Homo sapiens
Biosample type
1493
tissue
378
primary cell
cell line
142
in vitro differentiated cells
Organ
458
connective tissue
400
adipose tissue
204
liver
203
pancreas
193
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
3
eye
1
pituitary gland
Project
1491
AMP
2
T1D
Genome assembly (visualization)
1435
GRCh38
1377
hg19
Lab
1433
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Audit category:
3
inconsistent ontology term
biosample_type!
cell line
files.file_type!
fastq
BIOSAMPLE
ASSAY
1493 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
2
liver
147
32
20
1
islet of Langerhans
169
8
2
bone tissue
58
left cardiac atrium
40
1
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