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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
690
ChIP-seq
177
DNase-seq
90
ATAC-seq
17
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
690
DNA binding
271
DNA accessibility
17
DNA methylation
Target of assay
523
histone modification
522
histone
268
narrow histone mark
254
broad histone mark
167
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
187
October, 2019
167
August, 2017
163
June, 2019
116
July, 2018
111
May, 2019
74
April, 2019
70
November, 2017
64
July, 2019
59
October, 2018
44
May, 2022
39
November, 2019
38
May, 2021
35
May, 2024
19
November, 2018
17
December, 2017
16
October, 2017
11
March, 2020
7
January, 2019
6
April, 2018
6
September, 2017
4
December, 2018
2
January, 2018
1
March, 2019
Available data
1818
bam
1679
bigWig
1076
tsv
909
bed narrowPeak
496
bigBed narrowPeak
298
fastq
238
tagAlign
213
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1894
Homo sapiens
Biosample type
1901
tissue
648
primary cell
270
in vitro differentiated cells
240
cell line
4
stem cell
Organ
484
connective tissue
426
adipose tissue
421
pancreas
269
liver
227
brain
161
heart
114
limb
97
kidney
84
blood vessel
84
vasculature
66
bone element
58
musculature of body
42
nerve
33
artery
18
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1899
AMP
2
T1D
Genome assembly (visualization)
1651
GRCh38
1608
hg19
Lab
1820
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1901 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
2
islet of Langerhans
272
29
1
41
1
liver
147
85
2
20
1
bone tissue
58
tibial nerve
4
35
2
1
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