Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
579
ChIP-seq
177
DNase-seq
44
ATAC-seq
16
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
579
DNA binding
225
DNA accessibility
16
DNA methylation
Target of assay
517
histone modification
516
histone
266
narrow histone mark
250
broad histone mark
62
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
Date released
444
February, 2021
178
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
1
March, 2019
Available data
1859
bam
1736
bigWig
1076
tsv
948
bed narrowPeak
525
bigBed narrowPeak
329
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1731
Homo sapiens
Biosample type
1737
tissue
613
primary cell
522
cell line
225
in vitro differentiated cells
1
stem cell
Organ
481
connective tissue
423
adipose tissue
374
pancreas
229
liver
202
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1735
AMP
2
T1D
Genome assembly (visualization)
1676
GRCh38
1611
hg19
Lab
1675
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2017
BIOSAMPLE
ASSAY
1737 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
29
1
4
1
liver
147
53
2
20
1
bone tissue
58
left cardiac atrium
40
1
+ See 132 more…
See all biosamples
Download