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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
568
ChIP-seq
168
DNase-seq
43
ATAC-seq
16
small RNA-seq
10
WGBS
3
FAIRE-seq
Assay category
917
Transcription
568
DNA binding
214
DNA accessibility
10
DNA methylation
Target of assay
487
histone modification
486
histone
253
narrow histone mark
233
broad histone mark
81
transcription factor
22
RNA binding protein
2
chromatin remodeller
Date released
444
February, 2021
178
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
45
October, 2018
38
May, 2021
36
December, 2017
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1881
bam
1709
bigWig
1076
tsv
927
bed narrowPeak
544
bigBed narrowPeak
351
fastq
238
tagAlign
204
bed broadPeak
196
bed bed3+
167
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1703
Homo sapiens
Biosample type
1709
tissue
613
primary cell
465
cell line
259
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
366
pancreas
258
liver
200
brain
117
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
10
spleen
3
eye
1
pituitary gland
Project
1707
AMP
2
T1D
Genome assembly (visualization)
1650
GRCh38
1630
hg19
Lab
1688
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
BIOSAMPLE
ASSAY
1709 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
29
1
3
1
liver
147
78
20
1
bone tissue
58
heart left ventricle
3
29
3
2
2
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