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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
893
total RNA-seq
470
ChIP-seq
173
DNase-seq
40
ATAC-seq
16
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
909
Transcription
470
DNA binding
217
DNA accessibility
16
DNA methylation
Target of assay
377
histone modification
376
histone
214
broad histone mark
162
narrow histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
178
August, 2017
170
May, 2020
163
June, 2019
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1721
bam
1612
bigWig
1068
tsv
833
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1606
Homo sapiens
Biosample type
1612
tissue
590
primary cell
502
cell line
255
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
373
pancreas
259
liver
150
heart
126
brain
89
kidney
58
bone element
57
musculature of body
49
blood vessel
49
vasculature
39
limb
18
ureter
16
spleen
6
artery
3
eye
Project
1610
AMP
2
T1D
Genome assembly (visualization)
1553
GRCh38
1487
hg19
Lab
1551
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
BIOSAMPLE
ASSAY
1612 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
1
2
islet of Langerhans
266
29
1
3
1
liver
146
77
2
20
1
bone tissue
58
left cardiac atrium
40
1
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