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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
632
total RNA-seq
526
ChIP-seq
163
DNase-seq
36
ATAC-seq
14
small RNA-seq
10
WGBS
2
FAIRE-seq
Assay category
646
Transcription
526
DNA binding
201
DNA accessibility
10
DNA methylation
Target of assay
457
histone modification
456
histone
240
narrow histone mark
216
broad histone mark
69
transcription factor
19
RNA binding protein
2
chromatin remodeller
Date released
444
February, 2021
170
May, 2020
160
October, 2019
159
June, 2019
92
May, 2019
65
April, 2019
59
July, 2019
57
November, 2017
48
August, 2017
40
May, 2024
36
December, 2017
20
May, 2022
November, 2018
9
October, 2017
6
January, 2019
6
March, 2020
5
October, 2018
3
December, 2018
2
January, 2018
2
May, 2021
Available data
1459
bam
1383
bigWig
847
bed narrowPeak
801
tsv
485
bigBed narrowPeak
222
tagAlign
186
bed broadPeak
171
bed bed3+
163
bigBed broadPeak
151
txt
145
fastq
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1383
Homo sapiens
Biosample type
1383
tissue
421
primary cell
409
cell line
257
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
pancreas
258
liver
200
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
10
spleen
3
eye
1
pituitary gland
Project
1383
AMP
Genome assembly (visualization)
1333
GRCh38
1266
hg19
Lab
1323
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
November, 2018
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1383 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
1
2
2
liver
147
78
20
1
bone tissue
58
left cardiac atrium
40
1
heart left ventricle
3
29
3
2
2
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