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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
412
ChIP-seq
150
DNase-seq
41
ATAC-seq
16
WGBS
12
small RNA-seq
3
FAIRE-seq
Assay category
908
Transcription
412
DNA binding
194
DNA accessibility
16
DNA methylation
Target of assay
324
histone modification
323
histone
173
broad histone mark
150
narrow histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
178
August, 2017
170
May, 2020
138
June, 2019
116
July, 2018
84
October, 2019
68
May, 2019
65
April, 2019
53
July, 2019
45
October, 2018
38
May, 2021
36
December, 2017
21
November, 2018
20
May, 2022
19
November, 2019
11
March, 2020
7
October, 2017
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1681
bam
1530
bigWig
1053
tsv
752
bed narrowPeak
445
bigBed narrowPeak
365
fastq
178
bed bed3+
177
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
1524
Homo sapiens
Biosample type
1530
tissue
593
primary cell
522
cell line
259
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
373
pancreas
265
liver
brain
117
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1528
AMP
2
T1D
Genome assembly (visualization)
1508
hg19
1472
GRCh38
Lab
1509
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
BIOSAMPLE
ASSAY
1530 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
29
1
3
1
liver
147
82
2
20
1
bone tissue
58
body of pancreas
2
26
4
4
2
2
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