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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
ChIP-seq
150
DNase-seq
41
ATAC-seq
16
WGBS
12
small RNA-seq
3
FAIRE-seq
Assay category
908
Transcription
194
DNA accessibility
16
DNA methylation
Date released
444
February, 2021
143
May, 2020
138
June, 2019
116
July, 2018
95
August, 2017
53
July, 2019
38
May, 2021
20
May, 2022
19
November, 2019
14
November, 2018
14
October, 2019
9
March, 2020
7
October, 2017
6
April, 2018
2
January, 2018
Available data
1146
bam
1118
bigWig
1053
tsv
361
bed narrowPeak
157
txt
156
bigBed narrowPeak
154
fastq
151
bed broadPeak
150
bed bed3+
149
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
1118
Homo sapiens
Biosample type
1118
tissue
355
primary cell
144
in vitro differentiated cells
111
cell line
1
stem cell
Organ
462
connective tissue
404
adipose tissue
291
pancreas
176
liver
71
kidney
58
bone element
50
heart
43
limb
brain
38
musculature of body
18
ureter
13
blood vessel
13
vasculature
7
nerve
6
artery
4
spleen
3
eye
Project
1118
AMP
Genome assembly (visualization)
1096
hg19
1090
GRCh38
Lab
1097
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
brain
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
1118 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
1
3
1
liver
147
2
20
1
bone tissue
58
heart
4
18
1
1
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