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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
487
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
487
DNA binding
224
DNA accessibility
16
DNA methylation
Target of assay
487
histone modification
486
histone
253
narrow histone mark
233
broad histone mark
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
170
May, 2020
163
June, 2019
160
October, 2019
155
August, 2017
116
July, 2018
89
May, 2019
63
July, 2019
60
April, 2019
57
November, 2017
38
May, 2021
30
October, 2018
20
May, 2022
19
November, 2019
16
November, 2018
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
5
December, 2017
2
January, 2018
Available data
1818
bam
1644
bigWig
1076
tsv
874
bed narrowPeak
496
bigBed narrowPeak
298
fastq
238
tagAlign
213
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1638
Homo sapiens
Biosample type
1644
tissue
603
primary cell
222
in vitro differentiated cells
166
cell line
3
stem cell
Organ
464
connective tissue
406
adipose tissue
356
pancreas
226
liver
202
brain
110
heart
91
kidney
91
limb
67
blood vessel
67
vasculature
58
bone element
57
musculature of body
31
nerve
26
artery
18
ureter
10
spleen
3
eye
1
pituitary gland
Project
1642
AMP
2
T1D
Genome assembly (visualization)
1584
GRCh38
1559
hg19
Lab
1623
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1644 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
22
1
3
1
liver
147
45
2
20
1
bone tissue
58
heart
4
12
18
1
1
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