Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
436
ChIP-seq
161
DNase-seq
41
ATAC-seq
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
436
DNA binding
206
DNA accessibility
Target of assay
436
histone modification
435
histone
237
narrow histone mark
198
broad histone mark
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
170
May, 2020
160
October, 2019
153
August, 2017
147
June, 2019
116
July, 2018
89
May, 2019
60
April, 2019
54
July, 2019
38
May, 2021
30
October, 2018
20
May, 2022
19
November, 2019
13
October, 2017
11
March, 2020
10
November, 2018
6
April, 2018
6
January, 2019
6
November, 2017
5
December, 2017
2
January, 2018
Available data
1560
bam
1559
bigWig
918
tsv
707
bed narrowPeak
428
bigBed narrowPeak
215
fastq
196
bed broadPeak
176
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1553
Homo sapiens
Biosample type
1559
tissue
586
primary cell
217
in vitro differentiated cells
165
cell line
2
stem cell
Organ
462
connective tissue
404
adipose tissue
350
pancreas
226
liver
139
brain
102
heart
90
kidney
90
limb
66
blood vessel
66
vasculature
58
bone element
56
musculature of body
31
nerve
26
artery
18
ureter
8
spleen
3
eye
1
pituitary gland
Project
1557
AMP
2
T1D
Genome assembly (visualization)
1619
GRCh38
1559
hg19
Lab
1538
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1559 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
22
1
3
1
liver
147
45
2
20
1
bone tissue
58
kidney
20
13
1
+ See 123 more…
See all biosamples
Download