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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
total RNA-seq
4
ATAC-seq
2
ChIP-seq
2
DNase-seq
2
WGBS
2
small RNA-seq
Assay category
396
Transcription
6
DNA accessibility
2
DNA binding
2
DNA methylation
Target of assay
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
10
July, 2019
5
August, 2017
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
423
bam
406
bigWig
399
tsv
26
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
406
Homo sapiens
Biosample type
406
tissue
2
primary cell
Organ
464
connective tissue
406
adipose tissue
356
pancreas
226
liver
202
brain
145
heart
91
kidney
91
limb
67
blood vessel
67
vasculature
58
bone element
57
musculature of body
31
nerve
26
artery
18
ureter
10
spleen
3
eye
1
pituitary gland
Project
406
AMP
Genome assembly (visualization)
404
hg19
403
GRCh38
Lab
406
AMP-T2D consortium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
406 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
2
1
2
omental fat pad
4
1
2
1
subcutaneous adipose tissue
6
1
1
visceral abdominal adipose tissue
3
subcutaneous abdominal adipose tissue
1
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