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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
19
ATAC-seq
6
total RNA-seq
3
RRBS
2
WGBS
Assay category
68
DNA binding
19
DNA accessibility
6
Transcription
5
DNA methylation
Target of assay
67
control
1
broad histone mark
1
histone
1
histone modification
Date released
27
October, 2018
24
May, 2022
17
August, 2017
12
December, 2017
6
September, 2017
4
December, 2018
3
November, 2018
3
October, 2017
1
January, 2019
1
March, 2019
Available data
1907
bam
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
97
Homo sapiens
Biosample type
174
primary cell
98
tissue
55
cell line
24
in vitro differentiated cells
1
stem cell
Organ
43
pancreas
22
liver
20
adipose tissue
20
connective tissue
8
spleen
3
brain
2
musculature of body
Project
98
AMP
Genome assembly (visualization)
24
hg19
3
GRCh38
Lab
73
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
ATAC-seq
total RNA-seq
RRBS
WGBS
tissue
islet of Langerhans
7
19
6
liver
17
1
1
subcutaneous adipose tissue
10
body of pancreas
8
omental fat pad
8
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