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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
103
total RNA-seq
27
ATAC-seq
9
DNase-seq
7
WGBS
3
RRBS
2
FAIRE-seq
Assay category
183
DNA binding
103
Transcription
38
DNA accessibility
10
DNA methylation
Target of assay
73
histone modification
72
histone
62
transcription factor
48
control
45
broad histone mark
27
narrow histone mark
10
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
157
August, 2017
48
December, 2017
35
October, 2018
25
November, 2018
24
May, 2022
16
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1467
bam
1309
bigWig
931
bed narrowPeak
677
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
327
Homo sapiens
Biosample type
427
cell line
409
primary cell
334
tissue
140
in vitro differentiated cells
4
stem cell
Organ
213
pancreas
83
liver
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
334
AMP
Genome assembly (visualization)
273
hg19
257
GRCh38
Lab
308
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
334 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
103
20
1
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
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