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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1023
total RNA-seq
905
ChIP-seq
248
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
small RNA-seq
15
DNase-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1219
Transcription
905
DNA binding
285
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
227
August, 2021
193
May, 2020
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
36
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
Available data
1742
bam
1607
bigWig
1075
tsv
819
bed narrowPeak
398
bigBed narrowPeak
377
fastq
238
tagAlign
157
txt
64
xls
50
bed broadPeak
42
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2570
Homo sapiens
Biosample type
2579
tissue
829
primary cell
619
cell line
394
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
467
pancreas
361
liver
286
heart
240
brain
231
kidney
158
bone element
130
blood vessel
130
vasculature
90
limb
71
artery
53
eye
50
musculature of body
43
nerve
25
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2513
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1693
GRCh38
1604
hg19
Lab
2258
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
month_released!
June, 2019
award.project!
T1D
BIOSAMPLE
ASSAY
2579 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
69
56
6
4
1
1
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
3
1
1
2
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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