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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1025
total RNA-seq
867
ChIP-seq
231
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1215
Transcription
867
DNA binding
431
DNA accessibility
38
DNA methylation
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
241
October, 2019
227
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
74
October, 2018
73
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
39
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1883
bam
1732
bigWig
1076
tsv
926
bed narrowPeak
561
bigBed narrowPeak
353
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2660
Homo sapiens
Biosample type
2669
tissue
839
primary cell
653
cell line
343
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
450
pancreas
360
liver
298
kidney
270
heart
265
brain
158
bone element
132
blood vessel
132
vasculature
118
limb
76
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2599
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1819
GRCh38
1726
hg19
Lab
2412
AMP-T2D consortium
141
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
2669 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
71
39
1
4
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
bone element
84
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