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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
ChIP-seq
178
DNase-seq
131
ATAC-seq
87
RNA microarray
27
WGBS
24
pCHi-C
13
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
Transcription
867
DNA binding
315
DNA accessibility
38
DNA methylation
13
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
220
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
68
February, 2023
50
May, 2020
48
December, 2017
31
March, 2020
30
July, 2019
26
November, 2018
22
October, 2017
21
November, 2019
7
December, 2018
7
January, 2019
6
September, 2017
2
December, 2019
2
January, 2018
1
August, 2021
1
August, 2022
1
May, 2022
Available data
965
bam
842
bed narrowPeak
794
bigWig
561
bigBed narrowPeak
254
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
5
bed bed3
1
tagAlign bed3+
Organism
1339
Homo sapiens
Biosample type
1347
tissue
511
cell line
363
primary cell
207
in vitro differentiated cells
8
stem cell
Organ
244
brain
167
liver
164
heart
164
pancreas
120
blood vessel
120
vasculature
115
limb
102
kidney
96
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
1345
AMP
2
T1D
Genome assembly (visualization)
823
GRCh38
794
hg19
Lab
1347
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
BIOSAMPLE
ASSAY
1347 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
snDrop-seq
snATAC-seq
tissue
liver
145
2
3
1
1
1
islet of Langerhans
71
1
34
4
1
1
1
1
bone element
84
heart left ventricle
35
3
2
4
1
1
1
body of pancreas
35
4
4
2
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