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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
109
ATAC-seq
107
single cell RNA-seq
87
RNA microarray
54
total RNA-seq
24
pCHi-C
13
Hi-C
11
RRBS
11
WGBS
3
snDrop-seq
2
snATAC-seq
1
DNase-seq
Assay category
292
DNA binding
161
Transcription
112
DNA accessibility
22
DNA methylation
13
3D chromatin structure
Target of assay
185
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
106
August, 2017
101
February, 2021
99
August, 2021
82
October, 2019
77
February, 2023
29
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
15
April, 2019
14
July, 2019
12
December, 2017
9
October, 2017
6
September, 2017
4
December, 2018
4
July, 2018
3
December, 2019
3
November, 2018
2
May, 2022
1
August, 2022
1
January, 2019
1
May, 2023
Available data
1882
bam
bigWig
1075
tsv
842
bed narrowPeak
561
bigBed narrowPeak
351
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
712
Homo sapiens
Biosample type
714
tissue
136
primary cell
107
cell line
91
in vitro differentiated cells
5
stem cell
Organ
156
heart
100
bone element
76
liver
70
pancreas
66
connective tissue
65
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
25
musculature of body
19
kidney
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
712
AMP
2
T1D
Genome assembly (visualization)
86
hg19
70
GRCh38
Lab
714
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
714 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
total RNA-seq
pCHi-C
Hi-C
RRBS
WGBS
snDrop-seq
snATAC-seq
DNase-seq
tissue
islet of Langerhans
42
32
20
4
1
1
1
bone element
84
liver
63
1
1
1
1
3
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
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