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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
97
total RNA-seq
10
DNase-seq
10
WGBS
9
ATAC-seq
3
RRBS
2
FAIRE-seq
Assay category
220
DNA binding
97
Transcription
21
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
175
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
16
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
Available data
1882
bam
1711
bigWig
1075
tsv
842
bed narrowPeak
561
bigBed narrowPeak
351
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
344
Homo sapiens
Biosample type
427
cell line
351
tissue
240
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
187
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
351
AMP
Genome assembly (visualization)
279
GRCh38
275
hg19
Lab
351
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
351 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
97
1
1
liver
67
2
1
1
body of pancreas
33
2
2
4
spleen
20
1
2
1
pancreas
16
2
1
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