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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
91
total RNA-seq
10
DNase-seq
9
ATAC-seq
6
single cell RNA-seq
2
FAIRE-seq
2
WGBS
Assay category
220
DNA binding
97
Transcription
21
DNA accessibility
2
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
170
August, 2017
58
October, 2018
48
December, 2017
20
November, 2018
16
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
Available data
1882
bam
1711
bigWig
1075
tsv
842
bed narrowPeak
561
bigBed narrowPeak
351
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
333
Homo sapiens
Biosample type
426
cell line
340
tissue
239
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
183
pancreas
82
liver
41
adipose tissue
41
connective tissue
22
spleen
12
brain
Project
340
AMP
Genome assembly (visualization)
272
hg19
271
GRCh38
Lab
340
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
340 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
FAIRE-seq
WGBS
tissue
islet of Langerhans
28
91
1
6
1
liver
67
2
1
body of pancreas
33
2
4
spleen
20
1
1
pancreas
16
1
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