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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
933
total RNA-seq
672
ChIP-seq
174
DNase-seq
115
ATAC-seq
107
single cell RNA-seq
87
RNA microarray
27
WGBS
20
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
1056
Transcription
672
DNA binding
295
DNA accessibility
38
DNA methylation
12
3D chromatin structure
Target of assay
425
histone modification
424
histone
244
broad histone mark
180
narrow histone mark
158
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
40
March, 2020
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
22
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1696
bam
1551
bigWig
1067
tsv
691
bed narrowPeak
514
bigBed narrowPeak
351
fastq
207
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
8
bedpe bed3+
8
hic
6
csv
5
bed bed3
Organism
2175
Homo sapiens
Biosample type
2183
tissue
585
cell line
490
primary cell
332
in vitro differentiated cells
8
stem cell
Organ
545
connective tissue
487
adipose tissue
439
pancreas
315
liver
265
heart
179
brain
158
bone element
107
blood vessel
107
vasculature
106
kidney
82
musculature of body
53
limb
47
artery
35
eye
25
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2179
AMP
4
T1D
Genome assembly (visualization)
1580
GRCh38
1549
hg19
Lab
2183
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
BIOSAMPLE
ASSAY
2183 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
snATAC-seq
tissue
adipose tissue
382
2
2
3
1
islet of Langerhans
272
50
1
21
1
1
1
1
liver
146
140
2
1
3
1
1
1
1
bone element
84
heart left ventricle
3
35
3
2
18
4
1
1
1
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