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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
987
total RNA-seq
867
ChIP-seq
86
RNA microarray
68
single cell RNA-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1071
Transcription
867
DNA binding
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
279
August, 2017
222
October, 2019
193
May, 2020
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
38
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1662
bam
1508
bigWig
976
tsv
555
bed narrowPeak
377
bigBed narrowPeak
336
fastq
238
tagAlign
99
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2101
Homo sapiens
Biosample type
2108
tissue
796
primary cell
587
cell line
321
in vitro differentiated cells
10
stem cell
Organ
538
connective tissue
479
adipose tissue
421
pancreas
336
liver
233
brain
146
bone element
115
heart
91
kidney
84
blood vessel
84
vasculature
78
limb
48
musculature of body
40
nerve
30
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2042
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1484
GRCh38
1466
hg19
Lab
2011
AMP-T2D consortium
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Katalin Susztak, Upenn
1
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2021
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
2108 results
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total RNA-seq
ChIP-seq
RNA microarray
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
297
71
4
2
1
4
liver
167
145
1
3
1
1
1
1
bone element
84
kidney
27
56
1
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