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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1333
ChIP-seq
1083
total RNA-seq
225
ATAC-seq
180
DNase-seq
86
RNA microarray
68
single cell RNA-seq
31
pCHi-C
28
WGBS
22
snATAC-seq
17
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
1333
DNA binding
1169
Transcription
431
DNA accessibility
39
DNA methylation
17
3D chromatin structure
Target of assay
628
histone modification
627
histone
439
transcription factor
326
narrow histone mark
301
broad histone mark
266
control
89
recombinant protein
87
RNA binding protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
641
February, 2021
397
November, 2017
284
August, 2017
August, 2021
272
October, 2019
194
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
101
February, 2023
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
61
May, 2021
56
November, 2019
51
March, 2020
48
December, 2017
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
3
January, 2018
2
March, 2023
1
August, 2022
1
October, 2022
Available data
2481
bam
2232
bigWig
1270
bed narrowPeak
1079
tsv
916
bigBed narrowPeak
804
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
208
bed bed3+
101
txt
26
bed bedMethyl
26
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
Organism
3114
Homo sapiens
Biosample type
2508
tissue
1084
primary cell
618
cell line
352
in vitro differentiated cells
10
stem cell
Organ
731
liver
593
pancreas
546
connective tissue
487
adipose tissue
265
brain
247
heart
193
blood vessel
193
vasculature
188
kidney
158
bone element
137
artery
122
limb
92
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3018
AMP
47
KPMP
40
T1D
19
LungMap
2
community
Genome assembly (visualization)
2261
hg19
2211
GRCh38
Lab
2931
AMP-T2D consortium
57
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
180
inconsistent ontology term
28
inconsistent control
9
audit script error
1
inconsistent replicate
Audit category:
39
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
month_released!
August, 2021
BIOSAMPLE
ASSAY
3126 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
...and 1 more
tissue
islet of Langerhans
71
297
68
1
4
7
2
1
4
1
adipose tissue
2
382
3
1
3
liver
145
167
20
2
1
1
3
1
1
1
kidney
27
11
13
56
1
1
bone element
84
+ See 170 more…
cell line
HepG2
360
5
1
2
1
1
EndoC_BH1
15
33
19
1
6
3
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
+ See 11 more…
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