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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
49
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
Assay category
149
DNA accessibility
113
Transcription
27
DNA binding
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
8
February, 2021
July, 2019
4
October, 2019
3
December, 2019
Available data
152
bed narrowPeak
95
bam
88
bigWig
86
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
10
tsv
5
csv
1
hic
Organism
295
Homo sapiens
Biosample type
295
tissue
29
primary cell
19
cell line
Organ
535
connective tissue
498
pancreas
476
adipose tissue
352
liver
295
kidney
290
heart
242
brain
158
bone element
123
blood vessel
123
vasculature
114
limb
73
musculature of body
70
artery
55
eye
42
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
248
AMP
47
KPMP
Genome assembly (visualization)
163
GRCh38
88
hg19
Lab
142
Katalin Susztak, Upenn
106
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
month_released!
February, 2020
July, 2019
BIOSAMPLE
ASSAY
295 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
Hi-C
tissue
kidney
75
13
64
49
27
6
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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