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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
27
DNase-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
181
DNA binding
32
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
159
histone
159
histone modification
104
narrow histone mark
55
broad histone mark
22
control
Date released
86
October, 2019
82
November, 2017
May, 2019
25
June, 2019
16
October, 2017
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
198
bam
177
bigWig
167
bed narrowPeak
118
tagAlign
91
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
12
fastq
11
tsv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
225
Homo sapiens
Biosample type
225
tissue
21
primary cell
Organ
545
connective tissue
502
pancreas
486
adipose tissue
360
liver
299
kidney
289
heart
225
brain
158
bone element
112
limb
80
blood vessel
80
vasculature
73
musculature of body
66
artery
55
eye
42
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
225
AMP
Genome assembly (visualization)
178
GRCh38
118
hg19
Lab
225
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
February, 2020
May, 2019
BIOSAMPLE
ASSAY
225 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
cingulate gyrus
14
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